Package: fluoSurv 1.0.0
fluoSurv: Estimate Insect Survival from Fluorescence Data
Use spectrophotometry measurements performed on insects as a way to infer pathogens virulence. Insect movements cause fluctuations in fluorescence signal, and functions are provided to estimate when the insect has died as the moment when variance in autofluorescence signal drops to zero. The package provides functions to obtain this estimate together with functions to import spectrophotometry data from a Biotek microplate reader. Details of the method are given in Parthuisot et al. (2018) <doi:10.1101/297929>.
Authors:
fluoSurv_1.0.0.tar.gz
fluoSurv_1.0.0.zip(r-4.5)fluoSurv_1.0.0.zip(r-4.4)fluoSurv_1.0.0.zip(r-4.3)
fluoSurv_1.0.0.tgz(r-4.4-any)fluoSurv_1.0.0.tgz(r-4.3-any)
fluoSurv_1.0.0.tar.gz(r-4.5-noble)fluoSurv_1.0.0.tar.gz(r-4.4-noble)
fluoSurv_1.0.0.tgz(r-4.4-emscripten)fluoSurv_1.0.0.tgz(r-4.3-emscripten)
fluoSurv.pdf |fluoSurv.html✨
fluoSurv/json (API)
| # Install 'fluoSurv' in R: |
| install.packages('fluoSurv', repos = c('https://jferdy.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:e31dc96fd8. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 14 2024 |
| R-4.5-win | OK | Nov 14 2024 |
| R-4.5-linux | OK | Nov 14 2024 |
| R-4.4-win | OK | Nov 14 2024 |
| R-4.4-mac | OK | Nov 14 2024 |
| R-4.3-win | OK | Nov 14 2024 |
| R-4.3-mac | OK | Nov 14 2024 |
Exports:estimate.LTestimate.offsetextract.wellread.kineticwhen.threshold
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimation of time to death | estimate.LT |
| Estimate variance in signal | estimate.offset |
| Extract data for a single well | extract.well |
| fluoSurv: A package for estimating insect survival data from spectrophotometry measurements | fluoSurv-package fluoSurv |
| Fluorescence data measured on _Galleria mellonella_ | galleria |
| Reads a kinetic file, as produced by a Biotek plate reader. | read.kinetic |
| An injection experimental setup | setup |
| Computes when fluorescence exceeds a given threshold value | when.threshold |
